Apheris

Senior Director, Computational Drug Discovery

Apheris

full-time

Posted on:

Location Type: Remote

Location: New YorkUnited States

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About the role

  • Own scientific direction across modalities, data, and workflows.
  • Define which drug discovery problems, modalities, and data types Apheris prioritizes with our product offerings.
  • Guide how applications and models should evolve to remain maximally useful to pharma teams.
  • Own the “why” and high-level structure of new scientific initiatives and proposals, while partnering closely with internal ML and science teams on detailed methodology and execution.
  • Build and lead an established, growing computational drug discovery team.
  • Lead a core team already in place, including a senior medicinal chemist and a forward-deployed scientist, both with top-tier academic and industry backgrounds.
  • Set clear direction and execution standards across all customer-facing programs.
  • Oversee scientific quality and program enablement rather than personally owning detailed technical implementation.
  • Engage comfortably and credibly with leading computational drug discovery scientists at large pharmaceutical companies.
  • Lead deep scientific discussions on program strategy, model application, and decision-making trade-offs.
  • Serve as the visible scientific face to customers, including at senior leadership level.
  • Build trust and credibility through talks and direct engagement with the community.

Requirements

  • PhD in computational chemistry, cheminformatics, computational drug discovery, or a closely related field.
  • 8 + years of post-PhD industry experience in computational drug discovery or computational chemistry, including proven impact on drug discovery programs from hit finding through lead optimization.
  • Strong practical understanding of structure-based and ligand-based design, ADMET modelling, and integration of experimental and biophysical data in real drug programs.
  • Solid understanding of modern ML approaches in drug discovery, with sound judgment on where ML materially improves outcomes.
  • Strong scientific credibility, demonstrated through prior roles at leading pharma, top-tier biotech, or recognized computational drug discovery technology providers, and ideally a solid publication record.
  • Demonstrated experience leading and mentoring computational drug discovery teams.
  • Comfortable operating hands-on in a fast-moving, venture-backed, remote-first environment.
  • Clear motivation to enable customer drug discovery programs rather than run internal pipelines.
Benefits
  • Competitive compensation, including meaningful early-stage virtual share options
  • Generous holiday allowance
  • Great suite of benefits, including a wellbeing budget, mental health benefits, a work-from-home budget, a co-working stipend and a learning and development budget.
  • Remote-first working – work where you work best, whether from home or a co-working space near you
  • Office Days at our Berlin HQ or a different European location (3x a year)
Applicant Tracking System Keywords

Tip: use these terms in your resume and cover letter to boost ATS matches.

Hard Skills & Tools
computational chemistrycheminformaticscomputational drug discoverystructure-based designligand-based designADMET modellingmachine learningdata integrationdrug discovery programslead optimization
Soft Skills
leadershipmentoringcommunicationstrategic thinkingcredibilitytrust buildingcollaborationcustomer engagementscientific discussiondecision-making
Certifications
PhD