
Senior Scientist, Protein Design
OneTrust
full-time
Posted on:
Location Type: Remote
Location: Massachusetts • Pennsylvania • United States
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Salary
💰 $109,000 - $174,800 per year
Job Level
About the role
- Spearhead our molecular design and simulation initiatives.
- Support and accelerate our drug discovery and development pipeline of protein-based therapeutics.
- Collaborate with a passionate team of scientists and engineers.
- Build, evaluate, refine, and apply sophisticated computational approaches and infrastructures.
- Drive the discovery of complex molecules and expedite the development of protein therapeutics across various modalities and indications.
- Work closely with colleagues to design, develop and deliver therapeutic molecules for a range of clinical indications.
- Work directly with wet-lab scientists to design and optimize protein molecules for specific functions and properties.
- Collaborate across Therapeutics Discovery on the planning, prioritization, and delivery of designs for multiple concurrent programs.
- Serve as an In Silico Discovery Lead on diverse project teams.
- Model sophisticated biological systems to advise design methodology.
- Participate in internal and external presentations, peer-reviewed manuscripts and conference proceedings.
Requirements
- PhD in Biomedical Engineering, Biochemistry, Computational Biology, Computer Science, Structural Biology, Biophysics, Material Science, or other related quantitative field required.
- Advanced experience in computational protein modeling, design, structural biology, and biophysics is required.
- Ability to lead projects in cross-functional teams to completion in a collaborative manner is required.
- Experience in de novo protein design and sophisticated protein design techniques, such as large scale backbone editing is preferred.
- Experience with antibody and/or nanobody modeling and design is required.
- Experience with high performance computing (on-prem or cloud) is required.
- Knowledge of critical wet-lab techniques used in protein engineering such as yeast display, SPR, ITC, CD-spectroscopy is preferred.
- Solid understanding of current machine learning architectures is required.
- Advanced proficiency in Python and related data-science packages such as Pandas and Numpy is required.
- Ideal candidate is self-motivated, proactive, and independent.
- Experience using Schrodinger, Discovery Studio, MOE, GROMACS, NAMD or other molecular dynamics simulation software is preferred.
- Experience with powerful ML and biophysics packages for protein modeling and design such as AlphaFold, Boltz2 , ESMFold, ImmuneBuilder, ProteinMPNN, RFDiffusion, RFAntibody, Boltzgen, Germinal, Chai-2, Chroma, Rosetta, etc is required.
- Experience with retraining, fine-tuning, and building ML models such as LLMs to support advanced protein design and protein property prediction tools is preferred.
- Experience mentoring and leading junior scientists is strongly preferred.
- Desire for continuous learning and the ability to identify, evaluate and deploy emerging algorithms, models, and protein design workflows is required.
Benefits
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Applicant Tracking System Keywords
Tip: use these terms in your resume and cover letter to boost ATS matches.
Hard Skills & Tools
computational protein modelingprotein designstructural biologybiophysicsde novo protein designbackbone editinghigh performance computingmachine learning architecturesPythondata-science packages
Soft Skills
leadershipcollaborationself-motivatedproactiveindependentmentoringcontinuous learningproject management
Certifications
PhD in Biomedical EngineeringPhD in BiochemistryPhD in Computational BiologyPhD in Computer SciencePhD in Structural BiologyPhD in BiophysicsPhD in Material Science