OneTrust

Senior Scientist, Protein Design

OneTrust

full-time

Posted on:

Location Type: Remote

Location: MassachusettsPennsylvaniaUnited States

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Salary

💰 $109,000 - $174,800 per year

Job Level

About the role

  • Spearhead our molecular design and simulation initiatives.
  • Support and accelerate our drug discovery and development pipeline of protein-based therapeutics.
  • Collaborate with a passionate team of scientists and engineers.
  • Build, evaluate, refine, and apply sophisticated computational approaches and infrastructures.
  • Drive the discovery of complex molecules and expedite the development of protein therapeutics across various modalities and indications.
  • Work closely with colleagues to design, develop and deliver therapeutic molecules for a range of clinical indications.
  • Work directly with wet-lab scientists to design and optimize protein molecules for specific functions and properties.
  • Collaborate across Therapeutics Discovery on the planning, prioritization, and delivery of designs for multiple concurrent programs.
  • Serve as an In Silico Discovery Lead on diverse project teams.
  • Model sophisticated biological systems to advise design methodology.
  • Participate in internal and external presentations, peer-reviewed manuscripts and conference proceedings.

Requirements

  • PhD in Biomedical Engineering, Biochemistry, Computational Biology, Computer Science, Structural Biology, Biophysics, Material Science, or other related quantitative field required.
  • Advanced experience in computational protein modeling, design, structural biology, and biophysics is required.
  • Ability to lead projects in cross-functional teams to completion in a collaborative manner is required.
  • Experience in de novo protein design and sophisticated protein design techniques, such as large scale backbone editing is preferred.
  • Experience with antibody and/or nanobody modeling and design is required.
  • Experience with high performance computing (on-prem or cloud) is required.
  • Knowledge of critical wet-lab techniques used in protein engineering such as yeast display, SPR, ITC, CD-spectroscopy is preferred.
  • Solid understanding of current machine learning architectures is required.
  • Advanced proficiency in Python and related data-science packages such as Pandas and Numpy is required.
  • Ideal candidate is self-motivated, proactive, and independent.
  • Experience using Schrodinger, Discovery Studio, MOE, GROMACS, NAMD or other molecular dynamics simulation software is preferred.
  • Experience with powerful ML and biophysics packages for protein modeling and design such as AlphaFold, Boltz2 , ESMFold, ImmuneBuilder, ProteinMPNN, RFDiffusion, RFAntibody, Boltzgen, Germinal, Chai-2, Chroma, Rosetta, etc is required.
  • Experience with retraining, fine-tuning, and building ML models such as LLMs to support advanced protein design and protein property prediction tools is preferred.
  • Experience mentoring and leading junior scientists is strongly preferred.
  • Desire for continuous learning and the ability to identify, evaluate and deploy emerging algorithms, models, and protein design workflows is required.
Benefits
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Applicant Tracking System Keywords

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Hard Skills & Tools
computational protein modelingprotein designstructural biologybiophysicsde novo protein designbackbone editinghigh performance computingmachine learning architecturesPythondata-science packages
Soft Skills
leadershipcollaborationself-motivatedproactiveindependentmentoringcontinuous learningproject management
Certifications
PhD in Biomedical EngineeringPhD in BiochemistryPhD in Computational BiologyPhD in Computer SciencePhD in Structural BiologyPhD in BiophysicsPhD in Material Science