Apheris

Senior Director, Computational Drug Discovery

Apheris

full-time

Posted on:

Location Type: Remote

Location: Remote • 🇩🇪 Germany

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Job Level

Senior

About the role

  • Own scientific direction across modalities, data, and workflows.
  • Define which drug discovery problems, modalities, and data types Apheris prioritizes with our product offerings.
  • Guide how applications and models should evolve to remain maximally useful to pharma teams.
  • Balance scientific ambition with practicality and adoption in customer environments.
  • Build and lead an established, growing computational drug discovery team.
  • Lead a core team already in place, including a senior medicinal chemist and a forward-deployed scientist.
  • Hire and integrate 1–2 additional team members over the next 6–9 months as customer demand scales.
  • Set clear scientific direction and execution standards across all customer-facing programs.
  • Engage comfortably and credibly with leading computational drug discovery scientists at large pharmaceutical companies.
  • Lead deep scientific discussions on program strategy, model application, and decision-making trade-offs.
  • Provide authoritative guidance grounded in real-world drug discovery experience.
  • Build trust and credibility through publications, talks, and direct engagement with the community.
  • Drive hands-on scientific leadership across customer programs.
  • Ensure recommendations reflect how discovery programs are actually run, not theoretical workflows.

Requirements

  • PhD in computational chemistry, cheminformatics, computational drug discovery, or a closely related field.
  • 8+ years of post-PhD industry experience in computational drug discovery or computational chemistry, including proven impact on drug discovery programs from hit finding through lead optimization.
  • Deep, practical expertise in structure-based and ligand-based design, ADMET modeling, and integration of experimental and biophysical data.
  • Exceptional understanding of modern ML approaches in drug discovery, with sound judgment on where ML materially improves outcomes.
  • Strong scientific credibility, demonstrated through prior roles at leading pharma, top-tier biotech, or recognized computational drug discovery technology providers, and a solid publication record.
  • Demonstrated experience leading and mentoring computational drug discovery teams.
  • Comfortable operating hands-on in a fast-moving, venture-backed, remote-first environment.
  • Clear motivation to enable customer drug discovery programs rather than run internal pipelines.
Benefits
  • Competitive compensation, including meaningful early-stage virtual share options.
  • Generous holiday allowance.
  • Great suite of benefits, including a wellbeing budget, mental health benefits, a work-from-home budget, a co-working stipend and a learning and development budget.
  • Remote-first working – work where you work best, whether from home or a co-working space near you.
  • Office Days at our Berlin HQ or a different European location (3x a year).

Applicant Tracking System Keywords

Tip: use these terms in your resume and cover letter to boost ATS matches.

Hard skills
computational chemistrycheminformaticscomputational drug discoverystructure-based designligand-based designADMET modelingmachine learningbiophysical data integrationdrug discovery program impactlead optimization
Soft skills
scientific leadershipteam leadershipmentoringcommunicationcredibility buildingcustomer engagementstrategic decision-makingtrust buildingadaptabilitymotivation
Certifications
PhD